CAMERA Workflows

CAMERA utilizes workflows to launch data analysis tools. Workflows are configurable analysis packages that can be applied to data within the CAMERA workspace or to data uploaded from the local system. Please review the job submission policy to learn more about CAMERA's “fair use” scheduling policy.

CAMERA workflows include:

Data Preparation

  • QC Filter
  • 454 Duplicate Clustering

BLAST

  • BLASTn
  • BLASTp
  • BLASTx
  • MEGA Blast
  • TBLASTn
  • TBLASTx
  • BLAST Kegg

RNA Prediction

  • rRNA prediction by hmmer
  • rRNA prediction by blastn
  • tRNA prediction

Orf Prediction

  • Orf finder by fraggene_scan
  • Orf finder by metagene
  • Orf finder by six-reading-frame

Sequence Assembly

  • Assembly

Clustering

  • DNA Clustering
  • Protein clustering
  • Hierarchical protein clustering
  • 454 Duplicate Clustering

Functional Annotation

  • Metagenomic data annotation and clustering
  • Function annotation by PFAM
  • Function annotation by COG
  • Function annotation by KOG
  • Function annotation by TIGRFAM
  • Function annotation by NCBI PRK

Viral Diversity

  • Alpha Diversity
  • Gamma Diversity

Other: